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Error Taxonomy And Root Cause Analysis

Learn Error Taxonomy And Root Cause Analysis for free with explanations, exercises, and a quick test (for Prompt Engineer).

Published: January 8, 2026 | Updated: January 8, 2026

Why this matters

As a Prompt Engineer, you don’t just write prompts—you ship reliable behaviors. When outputs fail, you must quickly identify what kind of error it is and why it happened. A clear error taxonomy plus root cause analysis (RCA) turns random debugging into a repeatable process. You’ll use this skill to triage production issues, improve prompts, design evaluations, and prevent regressions.

  • Triage user reports (e.g., “the model ignored the schema”)
  • Diagnose failures in data extraction, RAG answers, and tool-using agents
  • Design targeted fixes and regression tests that stick

Concept explained simply

Error taxonomy = naming the type of mistake. Root cause analysis = discovering why it occurred so your fix actually works. Together, they help you move from patching symptoms to preventing the next incident.

Mental model

Think of it like a medical diagnosis:

  • Symptom: What you observe (e.g., extra text, wrong format)
  • Diagnosis: Standardized label (e.g., schema non-compliance)
  • Root cause: The underlying reason (e.g., prompt didn’t show a JSON example)
  • Treatment: Minimal change that addresses the cause (e.g., add explicit JSON schema + single example)

Error taxonomy for prompt engineers

Use these categories to label issues consistently. One incident can have multiple categories; pick the primary one first.

1) Hallucination / Unsupported claims

The model states facts not grounded in provided context or known sources.

  • Signals: Confident but wrong statements; invented citations
  • Typical causes: No retrieval; weak grounding instructions; temperature too high
  • Remedies: Require citations; constrain to provided context; add refusal policy for missing evidence
2) Omission / Coverage gaps

Required elements are missing (fields, constraints, edge cases).

  • Signals: Partial answers; skipped bullet points
  • Causes: Overlong instructions; buried requirements; token budget issues
  • Remedies: Make requirements explicit and near the end; use checklists; shorten context
3) Instruction-following failure

Model ignores imperative constraints (tone, length, steps).

  • Signals: Violated length/voice; missing steps
  • Causes: Competing instructions; vague language (“should” vs “must”)
  • Remedies: Use MUST/DO NOT; system messages; numbered constraints
4) Reasoning / Logic error

Flawed deductions or arithmetic mistakes.

  • Signals: Contradictions; wrong calculations
  • Causes: Insufficient chain-of-thought scaffolding; skipped intermediate steps
  • Remedies: Ask for steps; require intermediate variables; use verification prompts
5) Format / Schema non-compliance

Output not in required JSON/CSV/Markdown structure.

  • Signals: Extra prose; missing keys; invalid JSON
  • Causes: No explicit schema; examples not anchored; temperature too high
  • Remedies: Show exact schema; single JSON example; “Output JSON only” guard; add a validator step
6) Context / Reference mismatch

Model uses wrong or truncated context.

  • Signals: Answers don’t match the provided doc; outdated references
  • Causes: Retrieval misses; truncation; order of messages
  • Remedies: Improve retrieval; reduce noise; pin key facts in system prompt
7) Ambiguity / Underspecification

Prompt lacks clarity to resolve trade-offs.

  • Signals: Inconsistent outputs across runs; varied formats
  • Causes: Vague goals; unclear priority
  • Remedies: State priorities; provide tie-breakers; add examples with edge cases
8) Safety / Bias issues

Unsafe, biased, or disallowed content.

  • Signals: Harmful advice; stereotypes; PII leakage
  • Causes: Missing policies; absent refusal patterns
  • Remedies: Embed safety rules; red-team prompts; refusal scaffolds
9) Tool-use / API orchestration error

Agent chooses wrong tool or misreads tool output.

  • Signals: Repeated retries; tool with null results
  • Causes: Tool descriptions unclear; no success criteria
  • Remedies: Clarify tool docs; add selection rules; add verification step before final
10) Non-determinism / Variance

Outputs differ without input changes.

  • Signals: Flaky tests; intermittent failures
  • Causes: High temperature; randomness; beam differences
  • Remedies: Lower temperature; fix seeds where possible; multiple-sample consensus
11) Performance / Latency / Timeout

Too slow or timeouts prevent correct output.

  • Signals: Partial responses; retries
  • Causes: Large context; slow tools; network timeouts
  • Remedies: Slim context; cache; parallelize retrieval; timeouts with fallbacks

Root cause analysis (RCA) workflow

  1. Triage – Is it severe, frequent, user-visible? Reproduce once.
  2. Classify – Apply the taxonomy: pick a primary error type (and secondary if needed).
  3. Localize – Where is it happening? System vs user prompt, examples, retrieval, tools, parameters.
  4. Hypothesize – Use 5 Whys and form a minimal, testable hypothesis.
  5. Experiment – Change one variable at a time; collect before/after metrics.
  6. Fix – Implement the smallest, durable change.
  7. Guard – Add a regression test to prevent recurrence.
Quick checklist for any incident
  • [ ] Symptom captured with a concrete example
  • [ ] Error category assigned
  • [ ] Single primary suspect located
  • [ ] One-variable experiment designed
  • [ ] Metric defined (e.g., JSON validity rate)
  • [ ] Regression test added after fix

Worked examples

Example 1: Summarization misses constraints

Symptom: “Provide a 3-bullet summary with a title.” Model gives 5 bullets, no title.

  • Category: Instruction-following failure; Omission
  • Root cause: Constraints are buried mid-paragraph; “should” not “must”
  • Fix: Move constraints to end as numbered MUST list; add one ideal example
  • Guard: Test that length == 3 and title exists
Before/After prompt snippet

Before: “Please summarize the article. You should aim for 3 bullets and include a title.”

After: “Output MUST: 1) Title on first line 2) Exactly 3 bullets 3) No extra text. Example: Title: ... - Bullet 1 - Bullet 2 - Bullet 3”

Example 2: JSON extraction drifts into prose

Symptom: Model outputs JSON + an explanation sentence.

  • Category: Format / Schema non-compliance
  • Root cause: No single JSON-only example; no explicit "Output JSON only" rule
  • Fix: Provide strict schema, one example, and a DO NOT add prose rule
  • Guard: Automatic JSON validator test

Example 3: Agent picks wrong tool

Symptom: Agent queries a web search tool when a local knowledge base would be more precise.

  • Category: Tool-use / API orchestration error
  • Root cause: Tool descriptions lack selection criteria
  • Fix: Add success criteria and decision rules: “Use KB if query mentions internal product codes; else use Web.”
  • Guard: Simulated queries with expected tool choices

Exercises

Do these now. They mirror the graded exercises below.

Exercise 1: Identify error type(s) and root cause

Scenario: Your extraction prompt requests exact ISO date format and fields {name, start_date, end_date}. The model returns {"name": "Event" , "dates": "Jan–Mar 2024"} and sometimes adds a note line.

  • Task: 1) Label the primary and secondary error categories. 2) Write a minimal hypothesis about the cause. 3) Propose a one-change fix and a guard test.
Need a nudge?
  • Look for mismatched keys vs schema.
  • Check whether you showed a single JSON-only example.

Exercise 2: Prevent hallucinated sources

Scenario: In a RAG QA system, answers occasionally include fabricated citations when the context lacks evidence.

  • Task: 1) Classify the error. 2) Draft a refusal policy line. 3) Suggest one retrieval tweak. 4) Define a metric to track improvement.
Need a nudge?
  • Consider instructing the model to say “No direct evidence found.”
  • Think about top-k and context quality.

Common mistakes and self-check

  • Mistake: Fixing multiple things at once. Self-check: Did I change exactly one variable per test?
  • Mistake: Vague labels (“it’s bad”). Self-check: Did I assign a specific taxonomy category?
  • Mistake: Overfitting to one example. Self-check: Did I validate on a set of varied cases?
  • Mistake: Ignoring evaluation metrics. Self-check: Do I have a numeric success rate (e.g., JSON validity %)?
  • Mistake: Missing guardrails. Self-check: Did I add a regression test that would catch this again?

Practical projects

  • Build a tiny “error triage” sheet: columns for Symptom, Category, Hypothesis, Change, Metric, Result, Guard.
  • Create a 10-case dataset for your prompt and track: format compliance, omission rate, hallucination rate.
  • Design an agent tool-selection rubric and test with 8 synthetic queries.

Who this is for

  • Prompt Engineers and Data/ML practitioners who need reliable LLM behavior
  • Product folks triaging LLM features and user reports

Prerequisites

  • Basic prompt engineering (system/user messages, few-shot examples)
  • Familiarity with common LLM parameters (temperature, max tokens)

Learning path

  1. Learn the error taxonomy and memorize 3–5 core categories
  2. Practice RCA with 5 Whys and single-variable experiments
  3. Add metrics and guard tests to your workflow
  4. Apply to RAG, extraction, and agent tasks

Mini challenge

Given a user complaint “The bot keeps ignoring the word limit and sometimes cites blogs we never provided,” write: 1) two categories, 2) a single root cause hypothesis, 3) one minimal fix, and 4) a guard test.

Note: You can take the Quick Test below. Anyone can take it; progress is saved only for logged-in users.

Practice Exercises

2 exercises to complete

Instructions

Scenario: Your extraction prompt requests exact ISO date format and fields {name, start_date, end_date}. The model returns {"name": "Event" , "dates": "Jan–Mar 2024"} and sometimes adds a note line.

  • 1) Label the primary and secondary error categories.
  • 2) Write a minimal hypothesis about the cause.
  • 3) Propose a one-change fix and a guard test.
Expected Output
A short write-up naming categories (e.g., Format non-compliance; Omission), one hypothesis sentence, one prompt change, and one test.

Error Taxonomy And Root Cause Analysis — Quick Test

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